Sweetpotato Genome And Resource Database ENtry
Blast Search
STEP 1 - Select your databases
I. trifida nucleotide databases protein databases
Genome CDS PEP
Mx23Hm ITR_r1.0 ITR_r1.0_cds_ip ITR_r1.0_pep_ip
ITR_r1.0_masked ITR_r1.0_cds ITR_r1.0_pep
0431-1 ITRk_r1.0 ITRk_r1.0_cds_ip ITRk_r1.0_pep_ip
ITRk_r1.0_masked ITRk_r1.0_cds ITRk_r1.0_pep

  • "ip" means intrinsic and partial sequences (without transposons).
  • "masked" means repeat masked sequence.
STEP 2 - Enter your input sequence
(FASTA format recommended.)
STEP 3 - Set your parameters
Search program
BLASTN (search nucleotide databases using a nucleotide query.)
BLASTP (search protein databases using a protein query.)
BLASTX (search protein databases using a translated nucleotide query.)
TBLASTN (search translated nucleotide databases using a protein query.)
TBLASTX (search translated nucleotide databases using a translated nucleotide query.)

Number of search results
one-line descriptions will be reported:
alignments will be reported:

Advanced settings
Filter query sequence (DUST with blastn, SEG with others)
Perform gapped alignment
Expectation value